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Frame Series Training

BoxNet can be trained on frame series data using WarpTools fs_boxnet_train.

Training Data Structure

The --examples option to WarpTools fs_boxnet_train should be set to a folder containing TIFF files with examples.

Each file should have three z-slices

  • slice 0: the image data
  • slice 1: ternary mask, 0 is bg, 1 is particle, 2 is mask
  • slice 2: importance mask (not supported but need empty layer in file)

All files should be at the same pixel size. Different files can contain images with different dimensions.