Frame Series Training
BoxNet can be trained on frame series data using WarpTools fs_boxnet_train
.
Training Data Structure
The --examples
option to WarpTools fs_boxnet_train
should be set to a folder
containing TIFF files with examples.
Each file should have three z-slices
- slice 0: the image data
- slice 1: ternary mask, 0 is bg, 1 is particle, 2 is mask
- slice 2: importance mask (not supported but need empty layer in file)
All files should be at the same pixel size. Different files can contain images with different dimensions.